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Publications

2026

First page of SlideChat is a multimodal generative artificial intelligence assistant for whole-slide computational pathology across cancer types

SlideChat is a multimodal generative artificial intelligence assistant for whole-slide computational pathology across cancer types

Ying Chen*, Chenglong Ma*, …, Rongshan Yu#, Junjun He#, Yuanfeng Ji#

Paper Code Project

Nature Cancer

First page of ChexGen: A Generative Foundation Model for Chest Radiography

ChexGen: A Generative Foundation Model for Chest Radiography

Yuanfeng Ji*, Dan Lin*, Xiyue Wang*, …, Ping Luo#, Ruijiang Li#

The New England Journal of Medicine AI

First page of Cellular Architecture and Neighborhood-informed Virtual Spatial Tumor Profiling from Histopathology

Cellular Architecture and Neighborhood-informed Virtual Spatial Tumor Profiling from Histopathology

Yuchen Li*, Zhe Li*, …, Yuanfeng Ji, …, Ruijiang Li

Cell

First page of nnMIL: A Generalizable Multiple Instance Learning Framework for Computational Pathology

nnMIL: A Generalizable Multiple Instance Learning Framework for Computational Pathology

Xiangde Luo, Jinxi Xiang, Yuanfeng Ji, Ruijiang Li

Paper Code Project

Nature Biomedical Engineering

First page of Ensemble learning of pathology foundation models for precision oncology

Ensemble learning of pathology foundation models for precision oncology

Xiangde Luo*, Xiyue Wang*, …, Yuanfeng Ji, …, Ruijiang Li#

Cancer Cell

First page of SP-Mind: An Autonomous Reasoning Agent for Spatial Proteomics Analysis

SP-Mind: An Autonomous Reasoning Agent for Spatial Proteomics Analysis

Yuchen Yuan*, Yuanfeng Ji*, Zhongxiao Li, Ruijiang Li

Paper Code Dataset

International Conference on Machine Learning (2026)

First page of UniMedVL: Unifying Medical Multimodal Understanding and Generation Through Observation-Knowledge-Analysis

UniMedVL: Unifying Medical Multimodal Understanding and Generation Through Observation-Knowledge-Analysis

Junzhi Ning, Wei Li, …, Yuanfeng Ji, et al.

Paper Code Project Model Dataset

International Conference on Machine Learning (2026)

2025

First page of GMAI-VL & GMAI-VL-5.5M: A Large Vision-Language Model and A Comprehensive Multimodal Dataset Towards General Medical AI

GMAI-VL & GMAI-VL-5.5M: A Large Vision-Language Model and A Comprehensive Multimodal Dataset Towards General Medical AI

Tianbin Li, Yanzhou Su, Wei Li, …, Yuanfeng Ji, et al.

Paper Code Dataset

AAAI Conference on Artificial Intelligence (2025)

First page of Pancancer Outcome Prediction via a Unified Weakly Supervised Deep Learning Model

Pancancer Outcome Prediction via a Unified Weakly Supervised Deep Learning Model

Wenhua Yuan, Ying Chen, …, Yuanfeng Ji, et al.

Signal Transduction and Targeted Therapy

First page of RetinaLogos: Fine-Grained Synthesis of High-Resolution Retinal Images Through Captions

RetinaLogos: Fine-Grained Synthesis of High-Resolution Retinal Images Through Captions

Junzhi Ning, Cheng Tang, …, Yuanfeng Ji, et al.

International Conference on Medical Image Computing and Computer-Assisted Intervention (2025)

First page of Towards Interpretable Counterfactual Generation via Multimodal Autoregression

Towards Interpretable Counterfactual Generation via Multimodal Autoregression

Chenglong Ma*, Yuanfeng Ji*, …, Hongming Shan

Paper Code Project Model

International Conference on Medical Image Computing and Computer-Assisted Intervention (2025)

First page of SlideChat: A Large Vision-Language Assistant for Whole-Slide Pathology Image Understanding

SlideChat: A Large Vision-Language Assistant for Whole-Slide Pathology Image Understanding

Ying Chen*, Guoan Wang*, Yuanfeng Ji*#, …, Junjun He#

Paper Code Project

IEEE/CVF Conference on Computer Vision and Pattern Recognition (2025)

First page of CompGS: Unleashing 2D Compositionality for Compositional Text-to-3D via Dynamically Optimizing 3D Gaussians

CompGS: Unleashing 2D Compositionality for Compositional Text-to-3D via Dynamically Optimizing 3D Gaussians

Chongjian Ge, Chenfeng Xu, Yuanfeng Ji, et al.

IEEE/CVF Conference on Computer Vision and Pattern Recognition (2025)

Previous

First page of Large Language Models as Automated Aligners for Benchmarking Vision-Language Models

Large Language Models as Automated Aligners for Benchmarking Vision-Language Models

Yuanfeng Ji*, Chongjian Ge*, …, Ping Luo

International Conference on Learning Representations (2024)

First page of DDP: Diffusion Model for Dense Visual Prediction

DDP: Diffusion Model for Dense Visual Prediction

Yuanfeng Ji*, Zhe Chen*, …, Ping Luo

IEEE/CVF International Conference on Computer Vision (2023)

First page of DrugOOD: Out-of-Distribution Dataset Curator and Benchmark for AI-aided Drug Discovery

DrugOOD: Out-of-Distribution Dataset Curator and Benchmark for AI-aided Drug Discovery

Yuanfeng Ji*, Lu Zhang*, …, Yatao Bian

Paper Code Project

AAAI Conference on Artificial Intelligence (2022)Oral

First page of AMOS: A Large-Scale Abdominal Multi-Organ Benchmark for Versatile Medical Image Segmentation

AMOS: A Large-Scale Abdominal Multi-Organ Benchmark for Versatile Medical Image Segmentation

Yuanfeng Ji, Haotian Bai, …, Ping Luo

Paper Code Project

Conference on Neural Information Processing Systems (2022)Oral

First page of Multi-Compound Transformer for Accurate Biomedical Image Segmentation

Multi-Compound Transformer for Accurate Biomedical Image Segmentation

Yuanfeng Ji, Ruimao Zhang, …, Ping Luo

International Conference on Medical Image Computing and Computer-Assisted Intervention (2021)

First page of Multi-Frame Collaboration for Effective Endoscopic Video Polyp Detection

Multi-Frame Collaboration for Effective Endoscopic Video Polyp Detection

Lingyun Wu, Zhiqiang Hu, Yuanfeng Ji, Ping Luo, Shaoting Zhang

International Conference on Medical Image Computing and Computer-Assisted Intervention (2021)

First page of UXNet: Searching Multi-level Feature Aggregation for 3D Medical Image Segmentation

UXNet: Searching Multi-level Feature Aggregation for 3D Medical Image Segmentation

Yuanfeng Ji, Ruimao Zhang, Zhen Li, Jiamin Ren, Shaoting Zhang, Ping Luo

International Conference on Medical Image Computing and Computer-Assisted Intervention (2020)

First page of RANet: Region Attention Network for Semantic Segmentation

RANet: Region Attention Network for Semantic Segmentation

Dingguo Shen*, Yuanfeng Ji*, Ping Li, Yi Wang, Di Lin

Conference on Neural Information Processing Systems (2020)

First page of PRSNet: Part Relation and Selection Network for Bone Age Assessment

PRSNet: Part Relation and Selection Network for Bone Age Assessment

Yuanfeng Ji, Hao Chen, Dan Lin, Xiaohua Wu, Di Lin

International Conference on Medical Image Computing and Computer-Assisted Intervention (2019)

First page of ZigZagNet: Fusing Top-Down and Bottom-Up Context for Object Segmentation

ZigZagNet: Fusing Top-Down and Bottom-Up Context for Object Segmentation

Di Lin, Dingguo Shen, Siyang Shen, Yuanfeng Ji, et al.

IEEE/CVF Conference on Computer Vision and Pattern Recognition (2019)

First page of Multi-Scale Context Intertwining for Semantic Segmentation

Multi-Scale Context Intertwining for Semantic Segmentation

Di Lin, Yuanfeng Ji, Dani Lischinski, Daniel Cohen-Or, Hui Huang

European Conference on Computer Vision (2018)

IEEE Transactions on Cybernetics

SCN: Switchable Context Network for Semantic Segmentation of RGB-D Images

Di Lin, Ruimao Zhang, Yuanfeng Ji, Ping Li, Hui Huang

IEEE Transactions on Cybernetics